The following is a list of some of the openly available software that I currently maintain. Links to additional software, including code for publications and collaborations, can be found on my Gitlab or Github profiles. If there is a specific code you are looking for, please feel free to contact me.

Linear Assignment Tracking Toolbox

A MATLAB Toolbox for tracking moving and dividing cells

BioFormats Image Toolbox

A MATLAB Toolbox implementing the OME BioFormats Image library

ND2 Reader

MATLAB Toolbox and Python code for implementing the official SDK to read ND2 files (Nikon microscope images)

CU Boulder Hugo theme

A Hugo theme for the new BioFrontiers Advanced Light Microscopy core website

CyAn: Cyanobacteria image analysis toolbox

A MATLAB toolbox to analyze microscope images of cyanobacteria

Monte-Carlo Diffusion Simulation

A MATLAB script for simulating freely diffusing particles constrained within a boundary